Protein Info for H281DRAFT_00215 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Uncharacterized membrane protein YccC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 702 signal peptide" amino acids 1 to 46 (46 residues), see Phobius details transmembrane" amino acids 68 to 86 (19 residues), see Phobius details amino acids 98 to 128 (31 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details amino acids 266 to 286 (21 residues), see Phobius details amino acids 398 to 416 (19 residues), see Phobius details amino acids 418 to 439 (22 residues), see Phobius details amino acids 449 to 478 (30 residues), see Phobius details amino acids 486 to 508 (23 residues), see Phobius details amino acids 516 to 538 (23 residues), see Phobius details PF04632: FUSC" amino acids 396 to 695 (300 residues), 39.7 bits, see alignment E=4e-14 PF13515: FUSC_2" amino acids 409 to 532 (124 residues), 79.3 bits, see alignment E=4.2e-26 PF11744: ALMT" amino acids 421 to 539 (119 residues), 24.3 bits, see alignment E=2.2e-09

Best Hits

KEGG orthology group: None (inferred from 89% identity to bug:BC1001_0861)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M8Q8 at UniProt or InterPro

Protein Sequence (702 amino acids)

>H281DRAFT_00215 Uncharacterized membrane protein YccC (Paraburkholderia bryophila 376MFSha3.1)
MMNRKSNLASSSPRWSNRLYAIATAIYRKRPVWMVSFSASEASLSEGLRAACASTAMLAL
GNLLHDPTFAWAAIGAFWTCLADAAGSNRARFASMMGFALLSTLCGGLTAFASAEGTAFA
ALALLIFTSLGAFGRIWGAATSQVTILAATACVVMVDRPMRDVREGLAFLGVYLIGCLFA
VALSLTVWRIHPFGASRASLRTVYVRLADIALDSARLLQQRSTPREWATHAAKFRADARA
ALERSRKALASVPATRTGAREAYDTLLALLTEGEALFAYLIAVSGACEKMPGDERRATRA
ARLLTGMGETLRSIGAQANEGRWELLAELQLRVRRLAGRLENALMEPVKLKSDFELVDFT
PVQAPPPRFADSVAATLARVWATLKANLSLKSVGLRHAARVGVTTTAGFLVIRALGLPFG
YWATMATLLILQPSIAATWPRSIERAAGSIVGGVLAAGIGYAIHSPLGISLAVFPLVMAT
MALRPVSYSLFVLFLTPTFVLVADFATPGASEFAYALTRLGNNVLGCVLALFATFYLWPT
REKGDYRTYLSDAVRANLAYLIAALESPRRSEKDMERLRRAAGLGSNNAEEAIARIRLEK
LEDSLVDTVTLTVLSLLRKMAGTATQLRLSANRREMQDSHDELRMWLAAVNADIEAALNR
TILPLRHDLPARERLTSLEADAVGELALMQRLLTERMREARG