Protein Info for H281DRAFT_00128 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 transmembrane" amino acids 250 to 268 (19 residues), see Phobius details PF00126: HTH_1" amino acids 8 to 66 (59 residues), 84.2 bits, see alignment E=5e-28 PF03466: LysR_substrate" amino acids 92 to 318 (227 residues), 141.7 bits, see alignment E=2.1e-45

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_0851)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>H281DRAFT_00128 transcriptional regulator, LysR family (Paraburkholderia bryophila 376MFSha3.1)
MLPAVPDLRQLRYFVTVAEEKHFGRAAARLSMTQPPLSQAIRALEETLGVELFARTKRSV
ELTPVGADLLPEVQRLLAGAEGLRPLAQSLARGEAGVLSLAFVSTADYGLLPLLLRDFGA
RYPRVRLELTEATSDVQVDELVAGRIDAGLVIAPAPSRHAAQLSWLPIAREPLVIAMSTD
TAARVAASGGAAGGSGDPHAEWLDTPVSLRELADAPLVIFPRRLAPGFYDIIMDCYGVAG
LQPRVGQEAIQMQTIVSLVSAGMGVALVPQSLRNLRRTGVVYRPLSESVPAIETGLVWRT
AKVSPVLAGFIEIVRAHAASADGQAARVP