Protein Info for H281DRAFT_00103 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, LacI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF00356: LacI" amino acids 37 to 81 (45 residues), 56.1 bits, see alignment 5.1e-19 PF00532: Peripla_BP_1" amino acids 95 to 340 (246 residues), 127.1 bits, see alignment E=2e-40 PF13407: Peripla_BP_4" amino acids 98 to 340 (243 residues), 41.6 bits, see alignment E=2.4e-14 PF13377: Peripla_BP_3" amino acids 200 to 362 (163 residues), 139.5 bits, see alignment E=2.4e-44

Best Hits

KEGG orthology group: None (inferred from 94% identity to bgf:BC1003_0828)

Predicted SEED Role

"Transcriptional regulator, LacI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M902 at UniProt or InterPro

Protein Sequence (362 amino acids)

>H281DRAFT_00103 transcriptional regulator, LacI family (Paraburkholderia bryophila 376MFSha3.1)
LSRSTSKAKPAAVSATGDESRPQPLSRASRSAEGLSIAGVARQAGVSVATVSRVLNAHEN
VRPATRDKVLAAVDASGYRVNELARNLRTAESRLLLTMVPDFGNPFYAEIVRGIDSVARQ
HGYFMLLCDTGADAGRERGYFDLLRRRRADGAICLDPATIQQAQSDASGALPWVACCEFD
PAVGVPYVGIDNYRAAGDAVRHLLSRGHRRIGLINSDIDYLYARQRQQGYLDALTDAGIT
PLDGWRMNLNSLDYEAGASAAATLMLPPDAPTAIFAVSDTLATGVLHGLRSVGKRVPDDV
AVVGFDDISIAAQIDPPLTTIAQPMRELGETAARLLLQRLANPLANVPGVLLPHRLVIRG
ST