Protein Info for H281DRAFT_00067 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transposase, IS4 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF01609: DDE_Tnp_1" amino acids 60 to 281 (222 residues), 62.7 bits, see alignment E=4.3e-21 PF13751: DDE_Tnp_1_6" amino acids 169 to 284 (116 residues), 60.5 bits, see alignment E=2e-20

Best Hits

KEGG orthology group: None (inferred from 84% identity to bmj:BMULJ_05741)

Predicted SEED Role

"ISPsy6, transposase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>H281DRAFT_00067 transposase, IS4 family (Paraburkholderia bryophila 376MFSha3.1)
LETADRTQPPELEAKTARLQEKIGQLRDQMHRLEQIKEELKTQPDGQLSLTDPDARSMAT
SGRGSGMVGYNVQMAVEARHHLIVAHEVTNSGHDRSQLSPMAQAARDSMSKRRLKVIADR
GYYSGPQIKACADAGIAAILPKNLTSGAKAHGRFDRADFIYIARDNEYLCPAGQRAIHRF
AREEHGMQLHRYWSSACPRCEIKSQCTPSDYRRITRWEHESVLETAQKRLDRMPDAMMVR
RRTVEHVFGTFKHWMGYTHFLTRRLANVSTEMSLHVLAYNLKRVMTILGFSRTMRAMRLV
GT