Protein Info for Ga0059261_4205 in Sphingomonas koreensis DSMZ 15582

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 transmembrane" amino acids 17 to 41 (25 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 163 to 189 (27 residues), see Phobius details amino acids 224 to 244 (21 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details amino acids 374 to 393 (20 residues), see Phobius details PF05977: MFS_3" amino acids 6 to 523 (518 residues), 659.1 bits, see alignment E=4.4e-202 PF07690: MFS_1" amino acids 18 to 359 (342 residues), 108 bits, see alignment E=5.1e-35

Best Hits

KEGG orthology group: None (inferred from 64% identity to swi:Swit_4414)

Predicted SEED Role

"Transport transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WIZ5 at UniProt or InterPro

Protein Sequence (548 amino acids)

>Ga0059261_4205 Arabinose efflux permease (Sphingomonas koreensis DSMZ 15582)
MPSSHPSPFAIPLFRSVWMASLFSNFGGLIQSVGASWMMIGLGASPQMIALVQASTTLPI
MLLSLWAGAVADNLDRRRVMLAAQSFMLIVSAALAALTWAGLITPWSLLIFTFLIGCGTA
INGPAWQASVGDMVPRPMLPDAVAFNSMGFNIARSAGPALGGAIVAVAGAAAAFLVNALS
YIGLIAVLFRWKPDLPPRRLPRERLGVAMAAGIRYVRLSPNIRVVLARAALFGFGASALP
ALMPLIARDLVGGGALTYGLLLGGFGAGAVLGAIGSRRLRTRLSTEALVRLATVMLAAGA
GLIALDPGLVLTLLALVLGGAGWVSALSTFNVSVQMASPRWVVARALALYQMAAFGGMAG
GSWAFGTIVEARGLPAALIAAAMVLLVSILAGLRYRVPAINQFDLDPRAGWQEPETAIPV
EPRSGPIVVTIEHRIAAANVPEFLRVMSERRRIRRRDGAFAWTLLRDLGDPDLWVERYHV
PTWIDYVRHNQRRTNADAANSAAIRALEIEDYEPVVHRRIERQTGSLPDARDPDARELDP
VTDATRSS