Protein Info for Ga0059261_3909 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 53 to 73 (21 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 115 to 131 (17 residues), see Phobius details PF07681: DoxX" amino acids 24 to 97 (74 residues), 47.5 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 67% identity to cse:Cseg_2103)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WHZ6 at UniProt or InterPro

Protein Sequence (136 amino acids)

>Ga0059261_3909 Predicted membrane protein (Sphingomonas koreensis DSMZ 15582)
MATPTPIARLLGDDRFAVLAATLLTLPYWTSGTAKLTDLPGALSEARHFGLEPAILTVAA
TILVQIGGSLLIILGRQAWLGAGALGVFTAIATLIAHPFWQVSDPMARFHERNTFLEHLG
LIGGLMLAAILRDRKG