Protein Info for Ga0059261_3876 in Sphingomonas koreensis DSMZ 15582

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details PF00672: HAMP" amino acids 112 to 165 (54 residues), 43.5 bits, see alignment 4.8e-15 PF00512: HisKA" amino acids 171 to 229 (59 residues), 39.1 bits, see alignment E=9.8e-14 PF02518: HATPase_c" amino acids 279 to 387 (109 residues), 90.8 bits, see alignment E=1.2e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WI27 at UniProt or InterPro

Protein Sequence (388 amino acids)

>Ga0059261_3876 Signal transduction histidine kinase (Sphingomonas koreensis DSMZ 15582)
VIGRARHRRRARLATQLTAAMAIITFLSVVVMLGGMIAFYVWSYNLFRGTLSPSAQRAYD
LVELNQLPSQTELEALLNAYQAWESGFEFRELIALIGLGIVALLVGIIAGRWLAARISDP
VHRVAAAARRVAAGDRTVRVAVPGHGVGEIHQLIADFNMMAREMERSEREMRESIAAIAH
ELRTPLTVLRGRLQGMADGVFAPDRNGLDGLILQTDALSQIIEDLRILSLAMSGRLVMRP
TMIELATEAGQTIDAFSAELARAGMTAERDLGPVRLAADGARLRQILLALLDNARRYAAS
GGTVRIETGSDARGAFLRVLDRGPGISAEDAERLFQRFWRADDSRSRDSGGTGLGLAVVK
AIAEAHGGSACAARRDGGGAQFEVRLPC