Protein Info for Ga0059261_3804 in Sphingomonas koreensis DSMZ 15582

Annotation: Cation/multidrug efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1031 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 408 (25 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 462 to 484 (23 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 848 to 866 (19 residues), see Phobius details amino acids 878 to 897 (20 residues), see Phobius details amino acids 903 to 927 (25 residues), see Phobius details amino acids 950 to 972 (23 residues), see Phobius details amino acids 979 to 1003 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1004 (1001 residues), 988.5 bits, see alignment E=5.2e-301 PF03176: MMPL" amino acids 295 to 503 (209 residues), 24.3 bits, see alignment E=2.2e-09 amino acids 850 to 1013 (164 residues), 22.9 bits, see alignment E=6e-09

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 70% identity to sjp:SJA_C1-25720)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JDL9 at UniProt or InterPro

Protein Sequence (1031 amino acids)

>Ga0059261_3804 Cation/multidrug efflux pump (Sphingomonas koreensis DSMZ 15582)
MQLSDVSVRRPVFAAVLSILLTIVGVVAFLSLSVREYPDTDPPVVSVETVYTGAAASVVE
ARITQPIEEALSGIEGIQTITSRSRDGSSDISIEFRPGRDIDSAANDVRDRIGSVTEDLP
EEALAPEVRKVDADSSPILFLVVSRPGWSRLELSDYVDRNLVDRFSTIDGVARVFVGGEA
RPSMRVWLDANKLAAFQLTPADVETALRTQNVELPAGRIESQQQNVTLRVDRPFASAESF
TRLVVGRGPDGYQVKLGDIAKVEQGAENPYTTFRMNGQSAVGMGIVRQSGANTLAVADAA
KKTAAGLDLPEGMTITVGSDDSLFIGRAIEGVWHTLAEAAVLVVLVIFLFLGSWRATLIP
AVTVPICLLGAFAVLWAFGFSINLLTLLALVLAIGLVVDDAIVVLENVYHRIEEGEPPLV
AAFKGTRQVGFAVISTTLVVCAVFVPICFLAGQTGLLFRELAVAMIGAVAFSGFLALSLT
PMLCSKMLKKQERGRFTGWVDDKFQKLENFYGRWLDKAINRPLIPMIGVLLFLGVAVGGF
LTLQSELVPAEDQGVAQVQLSAPEGTGFDQMDRYVVQTQEKLLPLLNEGAVRTVISRTPG
GFGASDDFNSGMFIVFLKPWEDRTTTTQQVAQQINRILVNEPAIRGNAQVRSALGRGRGQ
PIGFVLAGTTYEDLAKARDRILAAAAQNPGIINLDSDYKETKPQLRVDVDTTRAGDLGVS
VNDVSQALQTLLGSRRVSTYVDRGEEYRVIVQADAAGRATLANLSTIQVRARDGSLVPLS
NLVTTREVSGPRDLGRFNKLRAITLSGAVAPGYSLGEALTFLQEQAAASPEVIAVGYRGE
SQAFVETGGSILLVFGLTILIVYLVLAAQFESFVHPGVIIMTVPLAVAGGVLGLAVMGKT
LNLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGRSIAEAIRQASARRLRAILMTSIAMA
AGAVPLMFASGAGAAARQAIGVVIVFGVILATMITLFLIPILYSRLAKWTGSPQAVSREL
EAAMGEPQAAE