Protein Info for Ga0059261_3729 in Sphingomonas koreensis DSMZ 15582
Annotation: 50S ribosomal protein L3, bacterial
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 84% identical to RL3_SPHWW: 50S ribosomal protein L3 (rplC) from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
KEGG orthology group: K02906, large subunit ribosomal protein L3 (inferred from 81% identity to sch:Sphch_1829)MetaCyc: 48% identical to 50S ribosomal subunit protein L3 (Escherichia coli K-12 substr. MG1655)
Predicted SEED Role
"LSU ribosomal protein L3p (L3e)" in subsystem Ribosome LSU bacterial
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1L6JDQ2 at UniProt or InterPro
Protein Sequence (252 amino acids)
>Ga0059261_3729 50S ribosomal protein L3, bacterial (Sphingomonas koreensis DSMZ 15582) MRTGVIAKKLGMTRLFQDDGRHVPVTVLSLEGVQVVARREMDKDGYTAVQLGAGSAKAKN VAKPQRGQFGKAEVEPKAILAEFRVDEDGLLDVGAEISADHYVAGQFVDIQGRTQGKGFA GGMKRWGFGGMRATHGVSISHRALGSTGNRQDPGRVFKNKKMAGHMGDKNRTQQNLEIVG TDVERGLIFVKGSVPGSKGGWLFVKDSVKVARHADAPFPASIKQAANSNNDAPADTPADT VEAPEATDGQEG