Protein Info for Ga0059261_3595 in Sphingomonas koreensis DSMZ 15582

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF02899: Phage_int_SAM_1" amino acids 13 to 89 (77 residues), 45.8 bits, see alignment E=6.1e-16 PF00589: Phage_integrase" amino acids 112 to 283 (172 residues), 136.3 bits, see alignment E=9.5e-44

Best Hits

Swiss-Prot: 61% identical to XERC_ERYLH: Tyrosine recombinase XerC (xerC) from Erythrobacter litoralis (strain HTCC2594)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 67% identity to swi:Swit_0011)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WH61 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Ga0059261_3595 Site-specific recombinase XerD (Sphingomonas koreensis DSMZ 15582)
LSSIATGDDRALIERFLEMMAAEAGASANTIAAYGTDLRLASAVLAGGLADADRAAIERL
AHEWRDLSRATVARKSAALRRFFAFLADESLRADDPGAALPKPGGGRVLPKTLSSGDVER
IFAAIQARIDREPNDPRDLRLLALVELLYGSGLRATELVSLPRNSVQPDKPYLILRGKGG
RERLVPLSDRARAAVAVWREHVDAKRPWLFPSGKSHLSRIRLYQMIRAIAAEAGIPPDRI
SPHVLRHAFATHLLEGGADLRALQAMLGHADIATTEIYTHVDSGRLVQLVNERHPLADKP
RVDVSKEGA