Protein Info for Ga0059261_3403 in Sphingomonas koreensis DSMZ 15582

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF20142: Scaffold" amino acids 89 to 170 (82 residues), 40.1 bits, see alignment E=9.3e-14 PF01471: PG_binding_1" amino acids 197 to 252 (56 residues), 30.1 bits, see alignment 6.9e-11 PF03734: YkuD" amino acids 281 to 427 (147 residues), 76.8 bits, see alignment E=4.1e-25

Best Hits

KEGG orthology group: None (inferred from 54% identity to ccs:CCNA_01579)

Predicted SEED Role

"peptidoglycan binding domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WGN4 at UniProt or InterPro

Protein Sequence (499 amino acids)

>Ga0059261_3403 Uncharacterized protein conserved in bacteria (Sphingomonas koreensis DSMZ 15582)
MFGRSRSHGVAALPLLGLALGAPALAQQGAPRPPAATATPTSPQAAPPAAPVQITPVQIP
LPVLSPEQAQQVRQLIVQGRIAQGLRYSTAEAEVLPADDQGLVRAALDYARAIHIGRLDT
ADFQEDWALRPAAWDPLPGFAKAVADNRIGQWFAGLTPQYEGYDNLRKGLARYRRIETAG
GWGTIPAGPDLSAGSSGPRVAALRARLAVEDGEVTGSGDKFDAALKEAVVRAQRRYGLAP
TGTVSTGTLSALNVPVSSRVRQIMANMERWRWMPKEMPVDRIQVNIAAAQVAVFEGDRPV
MSMRGVTGKPGGGETPMLQSSIHSVVLNPPWNVPAGIAQRELFPKGAAYLARNGFKVIGT
GPNRRLQQSPAQSALGKYKFDFNNPFAVYLHDTPSKGTFSRFDRLASHGCIRLERPADLA
RLLLEGSTQWTPEAIDGALAKGETVRAALPNQVAVYLLYWTAYASGTGTMNFRGDPYGWD
KTLATKIEKRSAAQALAAR