Protein Info for Ga0059261_3359 in Sphingomonas koreensis DSMZ 15582

Annotation: Zn-dependent hydrolases, including glyoxylases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF00753: Lactamase_B" amino acids 59 to 278 (220 residues), 85.1 bits, see alignment E=6.7e-28 PF21221: B_lactamase-like_C" amino acids 308 to 349 (42 residues), 35.5 bits, see alignment 6.8e-13

Best Hits

KEGG orthology group: None (inferred from 59% identity to sal:Sala_0368)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WGI1 at UniProt or InterPro

Protein Sequence (364 amino acids)

>Ga0059261_3359 Zn-dependent hydrolases, including glyoxylases (Sphingomonas koreensis DSMZ 15582)
MDRPVISPDVSLTQDESFVATSHRGLTYPFGERVPGVGEAIEIARGVRWIRLPVPGPLNH
INCWLLDDGDTTTAVDTGLNIAEAVDAWRALFTAEPLAERPVGRVICTHFHPDHAGLAGW
LCRKFAARLWMTRGEWLTLRVLTADARDVVPDEQIAFWRAAGWDEAQIAEASAGGFGRMS
KMVAPLPLSYRRIVEGEIIAIGGADWRVVTASGHCPEHACLWNEREGVLIAGDQVLPRIS
SNVSLGLTEPEGDPLGEWLASIDRLMELPGDLLVLPAHGEPFTGLHARLAALRDEHLKRL
DILEAHLTEPRRAVDCFGRMFRRKIDGSMIGLATGETLAHLRRLEVEGRAVREERDGVWW
YRAP