Protein Info for Ga0059261_3282 in Sphingomonas koreensis DSMZ 15582

Annotation: Transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF13412: HTH_24" amino acids 5 to 51 (47 residues), 34.8 bits, see alignment E=1.5e-12 PF13404: HTH_AsnC-type" amino acids 5 to 46 (42 residues), 36.5 bits, see alignment E=5.2e-13 PF01037: AsnC_trans_reg" amino acids 71 to 144 (74 residues), 72.2 bits, see alignment E=4.1e-24

Best Hits

Swiss-Prot: 43% identical to Y4TD_SINFN: Uncharacterized HTH-type transcriptional regulator y4tD (NGR_a01550) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 59% identity to sil:SPO2189)

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WGB5 at UniProt or InterPro

Protein Sequence (155 amino acids)

>Ga0059261_3282 Transcriptional regulators (Sphingomonas koreensis DSMZ 15582)
MPVDLDPADRQLLALMHEDSVTQINTLAAETGLSPASVQRRLRRLRDRGAIAREVAVIDP
GAAGIGMSFVVMVELERERIDQLDAFRRKVMREPHVQQCYYVTGEADFVLVCVARDMAEF
EELTRRLFFGDENVRRFRTSVVMGRTKVGLTLPIA