Protein Info for Ga0059261_3261 in Sphingomonas koreensis DSMZ 15582

Annotation: Protein of unknown function (DUF938)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 PF06080: DUF938" amino acids 17 to 209 (193 residues), 228.1 bits, see alignment E=9.3e-72 PF13649: Methyltransf_25" amino acids 44 to 138 (95 residues), 27.3 bits, see alignment E=5e-10

Best Hits

Swiss-Prot: 36% identical to U585_DROME: UPF0585 protein CG18661 (CG18661) from Drosophila melanogaster

KEGG orthology group: None (inferred from 64% identity to sjp:SJA_C1-27780)

Predicted SEED Role

"SAM-dependent methyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WG91 at UniProt or InterPro

Protein Sequence (209 amino acids)

>Ga0059261_3261 Protein of unknown function (DUF938) (Sphingomonas koreensis DSMZ 15582)
MADPTPWIAAEDKGAARKHAPATLRNREAIAAVLAQVLPEAGLVLEVASGSGEHCAYFAG
RFPALRWQPSDPEPSALTSIASWCAGLANVAEPLAIDAAAADWPVERADALLCINMVHIS
PWEATLGLVEGAARVLPDGAPLILYGPYRRAEVETAPSNAAFDASLKARDPRWGLRDVAD
VTAAAAERGLAFERLAEMPANNIMLVYRR