Protein Info for Ga0059261_3129 in Sphingomonas koreensis DSMZ 15582

Annotation: SLBB domain/Polysaccharide biosynthesis/export protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02563: Poly_export" amino acids 51 to 126 (76 residues), 74.4 bits, see alignment E=6.6e-25 PF10531: SLBB" amino acids 133 to 181 (49 residues), 33.5 bits, see alignment 2.9e-12

Best Hits

KEGG orthology group: None (inferred from 61% identity to sal:Sala_1588)

Predicted SEED Role

"Capsular polysaccharide biosynthesis/export periplasmic protein WcbA; Capsular polysaccharide export system protein KpsC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WFT9 at UniProt or InterPro

Protein Sequence (240 amino acids)

>Ga0059261_3129 SLBB domain/Polysaccharide biosynthesis/export protein (Sphingomonas koreensis DSMZ 15582)
MIARALILTLSLSLAACSGTPRIGLKDGTTAVQVAQTGELPAPTRADMFDQNRPYLIGPF
DKLTIDVFGIDNLSRKDVQADAGGRFSFPLAGVVEAGGKTPAEVERMIADRLRTNYVRDP
QVTVNLRETVSQVVTVDGQVGSPGLYPVVGRMTLMRAVSTAKGVTENAKLDDVVVFRTVN
GQRYAALYNLKAIRRGAYADPEIFANDVVIVGDSPGRRLFRDMLTILPVLTTPLILLLQN