Protein Info for Ga0059261_3019 in Sphingomonas koreensis DSMZ 15582

Annotation: heavy metal efflux pump, CzcA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1051 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 339 to 358 (20 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 443 to 465 (23 residues), see Phobius details amino acids 484 to 505 (22 residues), see Phobius details amino acids 538 to 555 (18 residues), see Phobius details amino acids 872 to 891 (20 residues), see Phobius details amino acids 898 to 918 (21 residues), see Phobius details amino acids 925 to 948 (24 residues), see Phobius details amino acids 980 to 1000 (21 residues), see Phobius details amino acids 1007 to 1032 (26 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1036 (1036 residues), 1379.6 bits, see alignment E=0 PF00873: ACR_tran" amino acids 8 to 1033 (1026 residues), 791.3 bits, see alignment E=6.7e-242

Best Hits

Swiss-Prot: 68% identical to SILA_SALTM: Putative cation efflux system protein SilA (silA) from Salmonella typhimurium

KEGG orthology group: K07787, Cu(I)/Ag(I) efflux system membrane protein CusA (inferred from 81% identity to aex:Astex_3842)

MetaCyc: 68% identical to copper/silver export system RND permease (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-90; TRANS-RXN0-280

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JFD7 at UniProt or InterPro

Protein Sequence (1051 amino acids)

>Ga0059261_3019 heavy metal efflux pump, CzcA family (Sphingomonas koreensis DSMZ 15582)
MIARIILWSVANKLFVVLGALALVAAGLWAVRVTPIDALPDLSDTQVIIRTSYPGQAPQI
VENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVIFADGTDLYWARSRVLEYLNQVQGR
MPEAAKSAIGPDATGVGWVYEYALVDRTGGHDLSQLRSLQDWFLRYELKSLPGVAEVASI
GGMVRQYQVVLDPVKLAGYGVTHSQAVEAIQRANQEAGGAVVELAEAEYMVRASGYLKSL
DDFRAIPLRTAAGGVPVTLGEVATIQVGPEMRRGIAELDGDGEVAGGVVILRSGADARAT
IAAVQTKLEELKKSLPAGVAIVPTYDRSQLIDASIDNLTHKLIEEFIVVALVCALFLWHV
RSALVAIVTLPLGILAAFVVMRFQGVNANIMSLGGIAIAIGAMVDAAIVMIENAHKALER
WEHDHPGERLEGTERWRVITQAAIEVGPALFFSLLIITLSFVPVFTLQAQEGRLFAPLAF
TKTYTMAAAAILSVTLVPVLMGWLIRGRIPSEQANPINRALTAAYRPAIDWTLRRPKTVL
VIALLVFATTAWPVSRLGGEFLPAMNEGDLLYMPSALPGLSAAKASELLQQTDRMIKTVP
EVQSVFGKAGRAESATDPAPLEMFETTIRFKPRDQWRPGMTPEKLVEELDRAVKVPGLAN
IWVPPIRNRIDMLATGIKSPIGVKVSGSDLAEIDRIARDVEGVAKAVPGVGSALAERLTG
GRYVDIDIDRAAAARYGLNIADVQAIVAGAIGGETIGQTVEGLARYPISVRYPRELRDSP
EALRALPVLTPSGQQITLGTVAKVAIADGPPMLKTENGRPSTWVYVDVRGRDLASVVSDL
QAAVARQVKLSPGVSIAYSGQFEYLQRALDRLMLVVPATLAIIFLLLFLIFRRVGEAALI
MGTLPFAMTGGFWLLYLLGYHQSVATGVGFIALAGVAAEFGVVMLIYLKHALEARGPEPA
ADEVQHAVREGALLRVRPKAMTVAVIIAGLLPILVGSGAGSEVMSRIAAPMIGGMLTAPL
LSMFVIPAAYLLMRRPGATPASTRNLQGDDQ