Protein Info for Ga0059261_2990 in Sphingomonas koreensis DSMZ 15582

Annotation: Hemolysin activation/secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF08479: POTRA_2" amino acids 47 to 119 (73 residues), 52.3 bits, see alignment E=4.2e-18 PF03865: ShlB" amino acids 183 to 252 (70 residues), 26.2 bits, see alignment E=5.7e-10 amino acids 358 to 497 (140 residues), 54.5 bits, see alignment E=1.4e-18

Best Hits

KEGG orthology group: None (inferred from 38% identity to cak:Caul_2104)

Predicted SEED Role

"Hemolysin activation/secretion protein associated with VreARI signalling system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WFI2 at UniProt or InterPro

Protein Sequence (535 amino acids)

>Ga0059261_2990 Hemolysin activation/secretion protein (Sphingomonas koreensis DSMZ 15582)
LKTVVGHGWRASGLAIATMIAIGNGTPALAQDAAPVAPVAPPSAATFDIRAFQVRGNKLL
PPDAVERAVYPFMGPGRSEADVEAARAALQKAFEDAGYVAVSVFIPEQGVTGGILQLEVQ
PQAIGTVVVEGTKNPDAVRAQAPSLTPGQTPNITAFQRDVIAMNQKPTRRVTPELKAGVA
PGTLDVVLKVEESSAWHGTVEINNFSSAATTDLRASATLRYDDMWGRGDSLSLTAQTAPR
RTDDGTVFSGNYLTRLGQGTQLMLYGVHSDSDIAVIGGTSVVGKGNIFGVRLIQSLGASE
GFHHALTVGIDWKDFAEDLKLGSDTDSAPIEYFPATLSWRGDWTGEGRKSDLSVTGIFGI
RGLGDNKAAFEYKRYRARDSFFAFKLDAGHTQDVLDGAQIDARFNAQWSATPLISNEGFS
IGGMQSVRGYYESETLADYGFAYQLEFRTPDAAELIGGPLDSLRVYSFWDMGWGGIHEPL
RGQSERFRLMSLGAGARIKLFRYLNGALDVGSPLISGPESKTGDIFARFRIWGEF