Protein Info for Ga0059261_2767 in Sphingomonas koreensis DSMZ 15582

Annotation: Integral membrane protein, interacts with FtsH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 220 to 243 (24 residues), see Phobius details PF01027: Bax1-I" amino acids 30 to 242 (213 residues), 206.1 bits, see alignment E=2.8e-65

Best Hits

KEGG orthology group: K06890, (no description) (inferred from 66% identity to sjp:SJA_C1-12440)

Predicted SEED Role

"FIG005935: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JFM5 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Ga0059261_2767 Integral membrane protein, interacts with FtsH (Sphingomonas koreensis DSMZ 15582)
MANWSDPHTTAAPYATAAGTRDAAYDAGLRSYMLSVYNYMASGVLLSGVVALLFAWGGET
SMAYSVFANGGPLAWLIILSPLAIVFAMSFGQNKMSTGTLQALFWGFAVLMGLSLSTLLL
RYTGASVAQAFFATAAGFAGLSLYGYTTKRDLSGLGSFLIVGLIGLIVASIINIFTQSST
LSLIISFAGVLIFAGLTAYDTQRIKSMYAYVAGTDMVGKVVIMSALSLYLDFINMFQFLL
SIIGSSRD