Protein Info for Ga0059261_2762 in Sphingomonas koreensis DSMZ 15582

Annotation: Tetratricopeptide repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13428: TPR_14" amino acids 132 to 174 (43 residues), 27.8 bits, see alignment 4e-10 PF13432: TPR_16" amino acids 136 to 185 (50 residues), 31.3 bits, see alignment 3.7e-11 amino acids 172 to 231 (60 residues), 20.1 bits, see alignment E=1.1e-07

Best Hits

KEGG orthology group: None (inferred from 47% identity to swi:Swit_2758)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WEV6 at UniProt or InterPro

Protein Sequence (250 amino acids)

>Ga0059261_2762 Tetratricopeptide repeat (Sphingomonas koreensis DSMZ 15582)
MMLFLLAQIATPPTPVTGPPAPAQQRWEDCVELAVGDPARGVAEADRWKIAGGGFLANQC
LGMAYAAQRRWTSASAAFETAAREAEVARDVRASNYWAQAGNAWLAAANPAKARAALDAA
LATGNLTGLELGEAHLDRARALVASGSIGDARADLDQAVAKAPGDPMAWLLSATLARRTG
DLPLAQRHIKEALSRAGDDASVQLEAGNIAALSGDEAAARAAWERAMQLGPETEPGNAAR
TALKQFDAPQ