Protein Info for Ga0059261_2723 in Sphingomonas koreensis DSMZ 15582

Annotation: DNA gyrase, B subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 848 TIGR01059: DNA gyrase, B subunit" amino acids 21 to 848 (828 residues), 969.4 bits, see alignment E=4.3e-296 PF02518: HATPase_c" amino acids 48 to 191 (144 residues), 57.9 bits, see alignment E=4e-19 PF00204: DNA_gyraseB" amino acids 251 to 420 (170 residues), 196.5 bits, see alignment E=7.5e-62 PF01751: Toprim" amino acids 449 to 561 (113 residues), 69 bits, see alignment E=1e-22 PF21249: GyrB_hook" amino acids 563 to 586 (24 residues), 24.7 bits, see alignment (E = 4.3e-09) PF18053: GyrB_insert" amino acids 600 to 715 (116 residues), 29.9 bits, see alignment E=1.6e-10 PF00986: DNA_gyraseB_C" amino acids 776 to 837 (62 residues), 99.1 bits, see alignment 3.8e-32

Best Hits

KEGG orthology group: K02470, DNA gyrase subunit B [EC: 5.99.1.3] (inferred from 83% identity to sjp:SJA_C1-00470)

Predicted SEED Role

"DNA gyrase subunit B (EC 5.99.1.3)" in subsystem DNA topoisomerases, Type II, ATP-dependent or Resistance to fluoroquinolones (EC 5.99.1.3)

Isozymes

Compare fitness of predicted isozymes for: 5.99.1.3

Use Curated BLAST to search for 5.99.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WEQ2 at UniProt or InterPro

Protein Sequence (848 amino acids)

>Ga0059261_2723 DNA gyrase, B subunit (Sphingomonas koreensis DSMZ 15582)
MLGMESNDQNTPENTPNSNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVS
DNAIDEALAGHCDRIIIQLNADGSVSVEDNGRGIPTGIHAEEGVSAAEVIMTQLHAGGKF
ENTSDDNAYKVSGGLHGVGVSVVNALSEWLDLNIWRDGEEHYMRFAYGDATAPLKVIGPS
NGKKGTRVTFLASTEKVPGDGGTFKNQIEYDFEKLEHRYRELAFLNSGVRLFLRDARHEE
VKEVELFYEGGIAAFVKWLDRNKSPLFPDPISVNGQRDDIGIDVALEWNDSYYENVLCFT
NNIPQRDGGTHLAAFRAALTRTINSYADKSGLLKKEKVTLTGDDMREGLTAIVSVKLPDP
KFSSQTKDKLVSSEVRQPLEALMADKMSDWLEENPALARAIIQKVIDAAAAREAAKKARE
LTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHFQAILPLRGKI
LNVERARFDRMLSSKEIGTLIQAMGTGIGRDDFNLEKLRYHKIVIMTDADVDGAHIRTLL
LTFFYRQMPEIIENGHLFIAQPPLYKASKGRSEVYLKDDAALDDYLVEAGVGGNRLETSE
GTILGQDLARLVEHARRMKTLMRYVPRRYDPAIIEALALGSALDPEATREQRGERLAAVT
KRLDLTDEDARWSARVTEDGGFHFERLWRGVTDHHIVEAAFLTSAEGRKLHALAAEQAES
YAAVSKLVSVKSAQAEAEAAPAVEGEDEEPVVAAKGETLVSRPSELLNAILASGRKGLSI
QRYKGLGEMNAEQLWETTLDPQNRSMLVVAIDQADVADEIFTRLMGDVVEPRREFIQENA
LSVANLDV