Protein Info for Ga0059261_2621 in Sphingomonas koreensis DSMZ 15582

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details amino acids 220 to 244 (25 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 361 (343 residues), 110.2 bits, see alignment E=1.1e-35 amino acids 240 to 413 (174 residues), 33.8 bits, see alignment E=1.8e-12 PF00083: Sugar_tr" amino acids 59 to 208 (150 residues), 73.1 bits, see alignment E=2.2e-24 amino acids 202 to 412 (211 residues), 38.6 bits, see alignment E=6.5e-14

Best Hits

KEGG orthology group: K06610, MFS transporter, SP family, inositol transporter (inferred from 49% identity to clj:CLJU_c42580)

Predicted SEED Role

"Predicted L-rhamnose permease RhaY" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WEG7 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Ga0059261_2621 Arabinose efflux permease (Sphingomonas koreensis DSMZ 15582)
MSSASADREDWKNTILAGLANYIDAGSIVAGAVALALWKKEYGLDDSLLGLIAAFGPNAI
AAGIGALIGGRLCDLLGRKKIYQYDMLFYAFGMLWLVFAMNAWMVIIGFFLVGLAVGADI
PASWSLIAEMAPDKKRGKHSGVAQLLWYLGPVVVLVMALVLDKLGLLGVRIIFAHLAILA
IALTFLRSKMQESQRWVEAQKSGETAQRGRWQDLFTRQHIGSMAFLAGTYLFWNLWAGTN
GFFFPYILSTVGSQTQVVSVAVQTLSFLLGMASIFFIFMKLADRVNQRLLFGISAVTQVI
GMALLAIFPLTLPVAIIHVFLMSVGGGFGAQSFFQLWSSEMFPTALRATAQGVMFAIVRI
VLGVFSFFVPALVATGFHTLAWILVGFLAISGVIGFVWAPRNEGKSLEQLDAERAA