Protein Info for Ga0059261_2558 in Sphingomonas koreensis DSMZ 15582

Annotation: DoxX-like family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 49 to 66 (18 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details PF07681: DoxX" amino acids 12 to 88 (77 residues), 30.4 bits, see alignment E=5.1e-11 PF13564: DoxX_2" amino acids 15 to 107 (93 residues), 38.6 bits, see alignment E=1e-13

Best Hits

KEGG orthology group: None (inferred from 39% identity to jan:Jann_0759)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WE94 at UniProt or InterPro

Protein Sequence (126 amino acids)

>Ga0059261_2558 DoxX-like family (Sphingomonas koreensis DSMZ 15582)
MTGAARVHRTGWRIARAAAALLFGTAGVLKLVGIESMVGLFETIGWGQWFRYFTAGVELF
GAAMLISRRTAVPGAVMLACVSLGATIVNLWVIGRTPLPALFLLALTVGIAGMPIRASHR
YLLKKD