Protein Info for Ga0059261_2487 in Sphingomonas koreensis DSMZ 15582

Annotation: Large extracellular alpha-helical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1921 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF11974: bMG3" amino acids 525 to 631 (107 residues), 85.5 bits, see alignment 6.7e-28 PF01835: MG2" amino acids 641 to 740 (100 residues), 41.6 bits, see alignment 4e-14 PF07703: A2M_BRD" amino acids 1021 to 1196 (176 residues), 62.5 bits, see alignment E=1.7e-20 PF00207: A2M" amino acids 1258 to 1346 (89 residues), 39.2 bits, see alignment 1.5e-13 PF17973: bMG10" amino acids 1783 to 1906 (124 residues), 98.6 bits, see alignment 9.5e-32

Best Hits

KEGG orthology group: K06894, (no description) (inferred from 57% identity to swi:Swit_1162)

Predicted SEED Role

"Large extracellular alpha-helical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WE17 at UniProt or InterPro

Protein Sequence (1921 amino acids)

>Ga0059261_2487 Large extracellular alpha-helical protein (Sphingomonas koreensis DSMZ 15582)
MKHFARAAAVLALALAPIAAWGDSSPQVVLATPGMGDGAIERFTIRFSAPMVPLGDPRAA
APAKVTCPVGGEGRWVDQQTFVHEFASPLPGGTVCEFELNEKLKGLSGYAVAGSRTFKVD
AGGPTVKGMLPSRYGGQIEEDQVFLIGTNMPATRASIAAGAYCAVEGLGEQIPVEVLDAE
LPGKLIKDLNPERWEVRNFLNDSGIAEKLPDNDADRAKALASVVAVKCGRPLPPGRDVSL
VWGASIAGAGGKTAGAEQRFDFTVRKPFTARFECSRVNPQAGCSPVQEAWVRFSARVPKD
LAEQVRIELPDGKKLAPELSDDDKRANTVSDLKFKAPLPASTTAKLVLPAGVKDESGRVL
ANAERFPLEVRFDEAPPLVKFAAPFGIIEAQEGGILPVTVRNVEASLQGKGLSVAGQHMR
VDAADGVIAKWLRNIDKADDYDVDEIKRGEETVRINQTGAKSILPQGLGTALEPIALPGK
GKAFEVVGIPLKKPGFYVVELASPQLGQALLGRNAPRYVAAGALVTNMAVHFKWGREGSL
AWVTSLDSGKPVSGAAVQVTDSCTGAVLAKGTTDDMGRLAVKQGIPEPQSWGNCDDASSH
PLMVSARKGDDMSFTLTAWGEGIRPYDFDLRYGYEAANEIVHTIFDRALVRQGEVVNMKH
VLRRPVAQGFITPAGFTGKLKLSHRGSDTSFELPVTVDASGTGETQWNVPQGAPMGDYDL
QFVGPGKDGAEQTIWTSQSIKVDEYKLPTMKASVAGPKEAAIKPKSLPLDLFVGYLSGGG
ASNLPVELRIGYYDGISAPSGYDGYSFGGRAIAEGTKPLNGEGEEDTVTLPPMQTLPVTL
GADGTARTSVDIPQTLDGNSQMRVEMDYQDANGEILTASRRVPIYASGVQLGIKTDGWLM
KEDDLRLRFVALGTDGKPIKGQKVQVALYSREILTARRRLIGGFYAYENNAKTTKISASC
SASTDELGLAQCAIDPGVSGEVYAVATTTDSSGNTARAVTSVWLAGEDDWWFGGDNGDRM
DVIPEQQEYKSTDTARFQVRMPFRKATALVTVEREGVMSSFVTELSGDNPVVEVPMQGVY
APDVFVSVMAVRGRIGGWKLWWADLARRWNLPFFSREGAAPTAMVDLAKPSYRLGIAKVK
VGWEGHRMNVAVKADKERYAARDTAKVALQVNNPDGSVAPSADVAFVAVDEALLQLAPNE
SWDVLGAMMGERPISVLTSTAQTQVVGKRHYGRKAVEAGGGGGGDLSALNRENFQPVLLW
RGKVPLDAKGQAQVDVPLSDALTSFKLVAIALGDKGQSFGTGETSIRSAQDLSIFAGIPP
LVRNGDFFSAGFTLRNGSDKAMKVTASVELSPKVAQGRDLTVEIPAGGAVPIAWNLTAPG
GFDKLQWKVTAKDESGKANDAITVSQEIAPAVPVETWAATLVRVGEGGPVAIQPPAGALP
GFGNVSILLSDTLAPPLQGVRDYMAAYPYGCFEQRTSRAIVLGDMGEWNRLSGEMPVYLD
SDGLLRYFPSDSLRGSEALTSYILSITAEAGLPIPDGPRARMIEALKAVLDGRLRHEDYG
DVRLQKVAAFAALARQGAANAAMLGQIGMTPQDMPTSTLADYIAALGKVPGLANGAQLRA
AAEGVLKTRLVYEGTRIDLSDKANTAWWMMSSGDESVLKALAATLGRPSFSGEGPKMMVG
AAFRQQRGHWDTTAANAWGVIAARRFGQVYPASAVAGITTASLATQSVTRSWPLPDPQRS
FVMALPAVGRQTPLTLTQSGGAGPWAVVQVKAAVPLTQPLSAGYKLTRKTEVVQAKTQGT
LTRGDVIRVTLTVEASADRNWVVINDPVPAGATVIGSLGGQSEMLAEGGETAGSQPSYVE
RGRDAWRGYFAWLPRGTHTVTYVMRLNAAGRMQLPPSKVEAMYSPEIRAAVPNQPMVIAQ
R