Protein Info for Ga0059261_2467 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 52 to 74 (23 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 154 to 178 (25 residues), see Phobius details amino acids 197 to 220 (24 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 43 to 296 (254 residues), 131.6 bits, see alignment E=2e-42 TIGR00765: YihY family inner membrane protein" amino acids 45 to 296 (252 residues), 73.7 bits, see alignment E=1e-24

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 58% identity to swi:Swit_4768)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WDZ9 at UniProt or InterPro

Protein Sequence (311 amino acids)

>Ga0059261_2467 Predicted membrane protein (Sphingomonas koreensis DSMZ 15582)
VTEPISPESPEARRRGFHRHLSDLGVTDRVIEVIRRVVVGAYTDGFTHAGNLAYLSLVTL
FPFFIVATAIARLVGRTGDGLQAVGAFLQTVPPEVGALLRPAILEVLEARSGSLLWLGAL
VGLWTTSGFIETVRAILRQAYGVQSGTSFWRLKLGAIGLVIASVVLAMMAFSFQVLLIGA
EQFIWRVIPFASDAQRIISVTKIAPAIALYGALYILFYTLTPTRYRQSKCPKWPGPLFVT
IWWMACTAALPHVIGAFGGYGLTYGSLAGVMVALIFFFLIGFGVVIGAELNAALAETPEN
GLEGRQEKTGG