Protein Info for Ga0059261_2402 in Sphingomonas koreensis DSMZ 15582

Annotation: phage portal protein, HK97 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 TIGR01537: phage portal protein, HK97 family" amino acids 42 to 369 (328 residues), 176.3 bits, see alignment E=4.8e-56 PF04860: Phage_portal" amino acids 46 to 367 (322 residues), 245.2 bits, see alignment E=5e-77

Best Hits

KEGG orthology group: None (inferred from 65% identity to sal:Sala_2002)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WDV0 at UniProt or InterPro

Protein Sequence (370 amino acids)

>Ga0059261_2402 phage portal protein, HK97 family (Sphingomonas koreensis DSMZ 15582)
MNWFGRKSGRDASRPVLTRAHGAAGVLGEWPQGYEAQVREGYCANPVAQRAVKIVAESVA
DAPVEASDPALLALATARTQGQALIATLAVQLLLHGNAFVQILGDGAGGIAELFALRPER
VSVETDAGGWPAAYRYRVGGSITRIAAEDAAGRPQVIHMKAFSPVDDHYGLGCLGAASGA
IAIHNAATRWNKALLDNAARPSGALVYDPGDGSALAPAQFERLKADMETAFSGAANAGRP
MLLEGGLKWQAMSLSPADMDFVGLKAAAAREIALAFGVPPMLLGLPGDNSYANYREANRA
VWRLTILPLAEKIYTELAQGLAGWFPEARLWVAIDKVPAMAEDRERLWRSVSAADFLTDE
EKRAMLGLER