Protein Info for Ga0059261_2191 in Sphingomonas koreensis DSMZ 15582

Annotation: ribosomal subunit interface protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 TIGR00741: ribosomal subunit interface protein" amino acids 1 to 102 (102 residues), 58.7 bits, see alignment E=3.3e-20 PF02482: Ribosomal_S30AE" amino acids 3 to 97 (95 residues), 67 bits, see alignment E=2e-22 PF16321: Ribosom_S30AE_C" amino acids 131 to 184 (54 residues), 53.9 bits, see alignment E=1.2e-18

Best Hits

Swiss-Prot: 39% identical to HPF_RHIME: Ribosome hibernation promotion factor (hpf) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 71% identity to sal:Sala_2837)

Predicted SEED Role

"Ribosomal subunit interface protein" in subsystem Ribosome activity modulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J6X7 at UniProt or InterPro

Protein Sequence (192 amino acids)

>Ga0059261_2191 ribosomal subunit interface protein (Sphingomonas koreensis DSMZ 15582)
MDIRVSGHRVDTGNAIRQHVEDRLQGIADKYFSRAISAQVTFGKGPHDYGFTCDIVAHVM
QGLVLKGSHAAPEAHLAFDGAADKIEKQLRRYTRRLKDRNNGHAQAAFDGAYDAGYTVFQ
LDEEEEDVVDAPPVIAETRVDVPDASVSDAVMMLDLRNTNALLFKNSGTGNYNMVYRRAD
GTIGWVEPNRAA