Protein Info for Ga0059261_2150 in Sphingomonas koreensis DSMZ 15582

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 PF02576: RimP_N" amino acids 10 to 89 (80 residues), 79.4 bits, see alignment E=2.1e-26 PF17384: DUF150_C" amino acids 92 to 157 (66 residues), 57.7 bits, see alignment E=1.1e-19

Best Hits

Swiss-Prot: 67% identical to RIMP_SPHAL: Ribosome maturation factor RimP (rimP) from Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 67% identity to sal:Sala_0609)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WD71 at UniProt or InterPro

Protein Sequence (181 amino acids)

>Ga0059261_2150 Uncharacterized protein conserved in bacteria (Sphingomonas koreensis DSMZ 15582)
VADIAALTSLIEPEARALGFDLVRVKMFGGEGDRTLQVMAERPDTRQLNIDDCADLSRRI
SDRLDELEAAGRDPIPEAYRLEVSSPGIDRPLTRLKDFEDWKGHEARITLAEKIDGRKQF
KGDLAGVEGETIAITDGQGVTHAVPFASIEDAKLVITNRLIAATRPLSTEGADEFEAEEQ
D