Protein Info for Ga0059261_2129 in Sphingomonas koreensis DSMZ 15582

Annotation: Beta-propeller domains of methanol dehydrogenase type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 188 to 210 (23 residues), see Phobius details PF04536: TPM_phosphatase" amino acids 30 to 157 (128 residues), 112.5 bits, see alignment E=7.1e-37

Best Hits

KEGG orthology group: K06872, (no description) (inferred from 49% identity to eli:ELI_08950)

Predicted SEED Role

"Beta-propeller domains of methanol dehydrogenase type"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WD51 at UniProt or InterPro

Protein Sequence (283 amino acids)

>Ga0059261_2129 Beta-propeller domains of methanol dehydrogenase type (Sphingomonas koreensis DSMZ 15582)
MIRLLLALALAVLSGTAVQAQTFPKFTGLVVDDANVLPPDVEASLTQKLEALQRDTKRQL
VVVTIGDAQGYPLSDYGYQLGRAWGVGLKDADNGVILMIAPNNPKGQRGPRIEVGRGLEP
IVTDALAGTIVRGQMMPLLNEGNVPQAMVAGADALIAQLRASPEEAQAKVDAAVQEFNRT
HQRKAGGGGIGIGGILFWLFVFFIVIIPLIRRVRGRRYRGDDSDLPIVLWTIGSEIARHS
GGWSSGGGGWSSGDGGGGGGWGDGGFTGGGGGDFGGGGASGDW