Protein Info for Ga0059261_1967 in Sphingomonas koreensis DSMZ 15582

Annotation: Cytochrome B561

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 43 to 63 (21 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details PF01292: Ni_hydr_CYTB" amino acids 7 to 172 (166 residues), 84.1 bits, see alignment E=5.5e-28

Best Hits

KEGG orthology group: K12262, cytochrome b561 (inferred from 37% identity to bsb:Bresu_2568)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J6F1 at UniProt or InterPro

Protein Sequence (183 amino acids)

>Ga0059261_1967 Cytochrome B561 (Sphingomonas koreensis DSMZ 15582)
MREAYDRYSNVSILIHWTVAALVVVNLVIAITMPNDRDLFSWYKSINIAVLLLTIVWIGW
RLVHPWPRFPDSVPGWERALARGVYLAFYLMMLAVPLLGWATMSAGGGTGEVFGGIQWFD
LPVAKSPELRANLAAIHEMAVYVLVLLIFIHVCGALKHQFFDEDVVFHRMLPSLRQSHMD
DEI