Protein Info for Ga0059261_1930 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 transmembrane" amino acids 333 to 354 (22 residues), see Phobius details amino acids 375 to 392 (18 residues), see Phobius details PF01935: DUF87" amino acids 153 to 387 (235 residues), 165.3 bits, see alignment E=1.2e-52

Best Hits

KEGG orthology group: K06915, (no description) (inferred from 73% identity to sjp:SJA_C1-25040)

Predicted SEED Role

"Bll3818 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WCJ9 at UniProt or InterPro

Protein Sequence (557 amino acids)

>Ga0059261_1930 Predicted ATPase (Sphingomonas koreensis DSMZ 15582)
LTTEDLGGQRFETIRPASDIAEPAGVPLTGIGAVFAIGGASSEIVFDPAALDSLSGSADP
AIANAGTVGSQVKMRSGPSWLVANVRALRFDDASGRIVAQVDFLGEGVEEKLTGKLYGFR
RGVTRYPPPGTGVFPVSTADLRQIYAADDRPHIEVGNVYPTRDIRAALYIDAMLGKHFAL
LGSTGTGKSTSTALILHRICELAPQGHIVMIDPHGEYSAAFKTNGALFDVSNLAMPYWLM
NFEEHCEVFLTTAGSDRQVDGDILAKCILMAKQKNRLAAEFGKLTVDAPIPYLLSDLTQI
IQNEMGKMDKATDTAPYLRLKGKIDEIKADPRYAFMFSGMLVADTMASFISRIFRLPGDG
KPISIIDVSGVPSEITSVVVAVLSRMVFDYAIWSRGEAQRPILLVCEEAHRYVPNERNAD
GSSVGRILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRLNNDRDQAFVRAA
MPEGARGFLDSIPALRNREAIMVGEGVATPVRVAFDALDEAKRPASNDPLFSELWRHSGG
EEASLERTIKRWRAQGR