Protein Info for Ga0059261_1899 in Sphingomonas koreensis DSMZ 15582

Annotation: Lysophospholipase L1 and related esterases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00657: Lipase_GDSL" amino acids 46 to 272 (227 residues), 25.4 bits, see alignment E=1.4e-09 PF13472: Lipase_GDSL_2" amino acids 47 to 197 (151 residues), 48.3 bits, see alignment E=1.7e-16

Best Hits

KEGG orthology group: None (inferred from 51% identity to ccr:CC_0812)

Predicted SEED Role

"rhamnogalacturonan acetylesterase" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WCG8 at UniProt or InterPro

Protein Sequence (291 amino acids)

>Ga0059261_1899 Lysophospholipase L1 and related esterases (Sphingomonas koreensis DSMZ 15582)
MKKLAMALAVLALPAAAQAQSEAQPALDKREKRTDAAPIDAFKVILVGDSTMAPGSGWAS
MFCAMHVKSSIACLNLGRGGRSTRSYRAEGSWTIALNEARVAGYKKTWVLIQFGHNDQST
RAERWTDLNGEFGANLRQMVADVRAAGAHPVLVTPLTRREFRDGKLNNTLAAWGDEARKV
GAALQVPVIDLNARSAAAVQKLGAADSTALAQVPPLPEELEAARKGTTLKPRPAEEARAP
AVELPKTGPRGQLRPKFDYTHVGEAGARVFAKMVAHDLATAAPELRSHLMP