Protein Info for Ga0059261_1757 in Sphingomonas koreensis DSMZ 15582

Annotation: Protein of unknown function (DUF4007)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 PF13182: DUF4007" amino acids 14 to 306 (293 residues), 264.6 bits, see alignment E=4.9e-83

Best Hits

Predicted SEED Role

"FIG00856023: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WC32 at UniProt or InterPro

Protein Sequence (325 amino acids)

>Ga0059261_1757 Protein of unknown function (DUF4007) (Sphingomonas koreensis DSMZ 15582)
MRSLLDRPEAIVQFSGHETFPCRYGWLKKSFDGLQELEGRGVDEALAVFNPNHAIADFGV
GKNMVSSMRHWAIACGVLNATVKGGRTETLTTSKLGKLIFAGGDPFLEQPASLWLLHWRL
AALPGRATAWYFAFNEFNDAIFNRETLAARIMVRVDELREIGRLSGSRIARATVDRDAEC
FVRTYVSRASRKGLTEDGLESPFAELGLMTPIAGGALQFRRGPKPSLPDEVFAFALVEFW
QQLFPTRGTLSIETIAHEPGSPGRVFVMDEESLVERLERIADATAGALAWDEGAGLRQVS
ARTDVTSVSPLRLIQPLYAHYSEAA