Protein Info for Ga0059261_1701 in Sphingomonas koreensis DSMZ 15582

Annotation: Beta-lactamase class C and other penicillin binding proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00144: Beta-lactamase" amino acids 184 to 457 (274 residues), 115.9 bits, see alignment E=1.2e-37

Best Hits

Predicted SEED Role

"Beta-lactamase class C and other penicillin binding proteins" in subsystem Beta-lactamase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WBX7 at UniProt or InterPro

Protein Sequence (486 amino acids)

>Ga0059261_1701 Beta-lactamase class C and other penicillin binding proteins (Sphingomonas koreensis DSMZ 15582)
MAVGSKAMARNLSRLCLCGLALSLATPALADAPAISTPENLGIAVSAQIACAGIFVAERA
EADVLNQDIHPFAPFMKAVTLAVDRKARTVTASAPGAAARTALYRPVAGCTLLTGDVSTA
ALDAQAARLKPIRRNAARPWPIGDTPVTRIQAAAEAKLDRPALDKAVRAAFDEQNKDGYP
DTRAIVVVQGGAIVAERYAPGFDRNTEMLGWSASKSIMGTLVGLLVDDGVLKLDEPAPVP
EWKGEGDPRGKITLRQLLTMSSGLAFSESYVPGNDSIKMLFEAGDMGAMAASKPLKDAPG
TSWSYSSGTTNILSRIVFNATGGTLEGMTRFAQKRLFEPTGMTSALIEPDEAGVQIGSSY
AYATARDWARYGLLHLNKGKVGGRQLLSREWIDFAVTPTKASPRPVYGAQLWLNHAGSGG
EGRKLYPDLPEDTVMARGHSFQIVAAIPSQDAVIVRLGWTPEGQSFDWNKYLSRIAAALA
PARTAP