Protein Info for Ga0059261_1695 in Sphingomonas koreensis DSMZ 15582

Annotation: Transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 PF01978: TrmB" amino acids 39 to 92 (54 residues), 30.2 bits, see alignment E=8e-11 PF12802: MarR_2" amino acids 40 to 98 (59 residues), 49.5 bits, see alignment E=9.3e-17 PF13463: HTH_27" amino acids 43 to 107 (65 residues), 46.9 bits, see alignment E=6.6e-16 PF01047: MarR" amino acids 43 to 97 (55 residues), 35.4 bits, see alignment E=2e-12 PF09339: HTH_IclR" amino acids 48 to 91 (44 residues), 24.6 bits, see alignment E=4.5e-09

Best Hits

KEGG orthology group: None (inferred from 47% identity to jan:Jann_3945)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WC11 at UniProt or InterPro

Protein Sequence (148 amino acids)

>Ga0059261_1695 Transcriptional regulators (Sphingomonas koreensis DSMZ 15582)
MSAKSPSGKPFDLDRFLPYLLNQAGERTGKRFEPAYRETHGFSRTQWRILAHLGSYGELT
AATVSRRSNTEKTKVSRAVAALEEGGWLERVAADDRRAELLRLTASGHALFDGLAEQAVA
FDRALRKSLGAEQAQALETMLRQLAAED