Protein Info for Ga0059261_1618 in Sphingomonas koreensis DSMZ 15582

Annotation: Exoribonuclease R

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 PF00773: RNB" amino acids 49 to 347 (299 residues), 124.3 bits, see alignment E=6.6e-40 PF18614: RNase_II_C_S1" amino acids 406 to 459 (54 residues), 59.3 bits, see alignment 2.8e-20

Best Hits

KEGG orthology group: None (inferred from 62% identity to mlo:mll0040)

Predicted SEED Role

"ribonuclease II"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WBM3 at UniProt or InterPro

Protein Sequence (461 amino acids)

>Ga0059261_1618 Exoribonuclease R (Sphingomonas koreensis DSMZ 15582)
MKTIRDPSHALARELAAIRAEFQVPQAFPPEVLAAAHAAAGRTPSDHADWTDRAFVTLDP
ASATDLDQAFAIETAGRDLILHYAIADLAWFVDERGPIDAEAWTRGETLYLPDGKAGLYP
PVLAEGAASLLPDGPRPAVVFSVRIAPDGAVKLDAATRAVIRSHAKLAYATVRPEDLPAG
FTELSARIIAAEAERGAARVDPPEQEVSAGPDGKLTLSFRDRHPSEDQNAALSLACNMAV
ADALIAHGTGLFRVMAEPSDHAVRRLRHTARAFGIEWPSHATLTQFERMLDPADPRAAAL
MLAIRRAGNGAGYQVFRPGETPWHAAVAAPYAHATAPLRRLADRYVVQATLAVANGRPVP
DHVTQAFAKLPKVMARADARAGQIDRAVIDMAEAVMLAGNEGTTLGAVVTDIGERGAAIQ
LCSLPVTARVDASGLTPGDTLDVRLTQADPRARRIAFERLN