Protein Info for Ga0059261_1584 in Sphingomonas koreensis DSMZ 15582

Annotation: transcriptional regulator, LacI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF00356: LacI" amino acids 9 to 49 (41 residues), 51.1 bits, see alignment 1.9e-17 PF13407: Peripla_BP_4" amino acids 81 to 315 (235 residues), 41.7 bits, see alignment E=2.1e-14 PF00532: Peripla_BP_1" amino acids 81 to 333 (253 residues), 77.2 bits, see alignment E=3.2e-25 PF13377: Peripla_BP_3" amino acids 179 to 338 (160 residues), 110.5 bits, see alignment E=1.9e-35

Best Hits

KEGG orthology group: None (inferred from 62% identity to cps:CPS_0974)

Predicted SEED Role

"Transcriptional regulator of maltose utilization, LacI family" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J8I7 at UniProt or InterPro

Protein Sequence (342 amino acids)

>Ga0059261_1584 transcriptional regulator, LacI family (Sphingomonas koreensis DSMZ 15582)
MQRKPTSFDIAHLAGVSQPTVSRALRGGTGVNEATRKRIEAIAQKLNYRVDKAASNLRSR
HAETLAVLIFQDESADDSAINPFFLSMLGSIMRACADNGQDMLVSFQQLGSDWHQDYEDS
RRADGLILLGYGDYELYRAKLNELMAQGTHFVRWGSVQSEGLGLTVGCDNQGGGREATRH
LLGLGRRNIAFLGHASSHYPEFHDRYRGHVAALKEGGIIPRKRLQFDALTSEEAGAAAAE
ALIASGETFDAILAASDLIAIGAMRALAAHGIKAGEDVAVVGFDDIAAASFTNPPLTTVL
QDTRAAGRTLVETLLGRIRDEHVADVLLPAKLVVRRSCGSPG