Protein Info for Ga0059261_1511 in Sphingomonas koreensis DSMZ 15582

Annotation: Biopolymer transport proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 137 to 164 (28 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details PF01618: MotA_ExbB" amino acids 110 to 216 (107 residues), 103.8 bits, see alignment E=3e-34

Best Hits

KEGG orthology group: K03561, biopolymer transport protein ExbB (inferred from 66% identity to sch:Sphch_2885)

Predicted SEED Role

"MotA/TolQ/ExbB proton channel family protein" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J8N7 at UniProt or InterPro

Protein Sequence (258 amino acids)

>Ga0059261_1511 Biopolymer transport proteins (Sphingomonas koreensis DSMZ 15582)
MLTTILAAGAAAGAPPPTNFDILHAMNEGGVIAWGTATILTVMLFFSLYILFTKVFEQQK
ILNQYKRVRATFWNTASLREGAAKLEKDSAYRQLVDDALLAQDQYKELTDPIEAHDWLHG
SLKRSEDSINSQLNGGLAFLATVGSTAPFIGLFGTVVGIFRALIKIGAAGDASIGTVAGP
VGEALIMTALGLVVAVPAVLAYNWLQRRNKAIQEQMSGFANDVLGYLASDGRVKPSAGKK
APAAAPKAPPVATTTAKA