Protein Info for Ga0059261_1341 in Sphingomonas koreensis DSMZ 15582

Annotation: 2-oxoglutarate dehydrogenase, E1 component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 989 PF16078: 2-oxogl_dehyd_N" amino acids 15 to 48 (34 residues), 41.2 bits, see alignment (E = 2e-14) TIGR00239: oxoglutarate dehydrogenase (succinyl-transferring), E1 component" amino acids 16 to 964 (949 residues), 1119.3 bits, see alignment E=0 PF00676: E1_dh" amino acids 235 to 551 (317 residues), 169.8 bits, see alignment E=1.4e-53 PF02779: Transket_pyr" amino acids 622 to 812 (191 residues), 171.7 bits, see alignment E=2.5e-54 PF16870: OxoGdeHyase_C" amino acids 817 to 964 (148 residues), 171.2 bits, see alignment E=2.5e-54

Best Hits

Swiss-Prot: 59% identical to ODO1_OCHA4: 2-oxoglutarate dehydrogenase E1 component (sucA) from Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / JCM 21032 / NBRC 15819 / NCTC 12168)

KEGG orthology group: K00164, 2-oxoglutarate dehydrogenase E1 component [EC: 1.2.4.2] (inferred from 73% identity to npp:PP1Y_AT17276)

Predicted SEED Role

"2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)" in subsystem TCA Cycle (EC 1.2.4.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.4.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WAY8 at UniProt or InterPro

Protein Sequence (989 amino acids)

>Ga0059261_1341 2-oxoglutarate dehydrogenase, E1 component (Sphingomonas koreensis DSMZ 15582)
MVGAESLDFADIAGGVSPAFVETLYAKWKADPASVEAGWREWFDGLEGTVNGPSWERPNW
PLSDTDALTAALDPTQMEPAPKPARGGASPAPAAAPAASSADIARAANDSIRAMLLIRTY
RVRGHLAANLDPLGLSHQNLPADLTPEYHGFTAADLDRPIYLGGTMGLEKATIRELVEIL
RRNYCGNVGLEYMHIADVEERRFLQERMEGKDKAIEFTPEGKKAILSKVIEAEQWEKFLG
RKYVGTKRFGLDGGESMIPAMEAIIKYGGAQGVREIVYGMAHRGRLNMLGTVMAKPYRVI
FHEFAGGSANPDDIGGSGDVKYHLGTSTDREFDGVSVHMSLVANPSHLEAVDPVVLGKVR
AQQTNRNDLEDHEQVLPVLIHGDAAFAGQGIVWECLGFSGIRGYNTGGCIHFIINNQIGF
TTSPQFARSSPYPSDVAKGVQAPIFHVNGDDPEAVTFACKMAIEFRQTFKRDIVIDMWCY
RRFGHNEGDEPSFTQPLMYAKIKGHPGVSDIYAKRLEGEGVIDGEFAKAQAAAFTAHLED
EFTAGASYKANKADWFGGRWQGLGAPMDAETARRNVETGIDKKLFDSLGRTLTTIPDGLT
PHKTLNRVLDAKAAMFKSGENFDWATGEALAFGSLLSEGYGVRLSGQDSGRGTFSQRHAV
WVDQTDEHKYVPLNEIPHGRFEVLDSPLSEYGVLGFEYGYALADPKTLVLWEAQFGDFVN
GAQIMIDQFIAAGEAKWLRANGLVMLLPHGYEGQGPEHSSARPERFLQLCAGDNMQVANV
TTPANYFHLLRRQMHRNFRKPLIVMTPKSLLRHKLAVSKTEDFLGDTHFKRILSDPSAPA
DKDVKRVVLCSGKVAYDLIEARDAAGDTTTAIIRIEQLYPFPGEPLVARLARMTNVEEVV
WAQEEPKNNGYWFFVEPYIEACMVESGIKPQRPRYAGRAAAASPATGLMKRHQAEQGALV
ADALGHNVREEIRRARKTEDKKTAGKAGA