Protein Info for Ga0059261_1259 in Sphingomonas koreensis DSMZ 15582

Annotation: Ribbon-helix-helix domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 PF13467: RHH_4" amino acids 12 to 75 (64 residues), 83.6 bits, see alignment E=3.9e-28

Best Hits

KEGG orthology group: None (inferred from 45% identity to mno:Mnod_0693)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WAM6 at UniProt or InterPro

Protein Sequence (92 amino acids)

>Ga0059261_1259 Ribbon-helix-helix domain (Sphingomonas koreensis DSMZ 15582)
MIEAPPGGFQGPVKRSITIAGHPTSISLEPVFWAALEAAAAHRGLPINAVVAQIDHLRIG
GEDPPNLASAIRSWLFGLRQNCDTDENDSQLR