Protein Info for Ga0059261_1123 in Sphingomonas koreensis DSMZ 15582

Annotation: flagellar motor stator protein MotA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 199 to 222 (24 residues), see Phobius details TIGR03818: flagellar motor stator protein MotA" amino acids 1 to 282 (282 residues), 364.6 bits, see alignment E=1.5e-113 PF20560: MotA_N" amino acids 5 to 95 (91 residues), 109.2 bits, see alignment E=9.8e-36 PF01618: MotA_ExbB" amino acids 127 to 234 (108 residues), 53.1 bits, see alignment E=2.8e-18

Best Hits

Swiss-Prot: 36% identical to LAFT_VIBPA: Chemotaxis protein LafT (lafT) from Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)

KEGG orthology group: K02556, chemotaxis protein MotA (inferred from 54% identity to pzu:PHZ_c3123)

Predicted SEED Role

"Flagellar motor rotation protein MotA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J9Q2 at UniProt or InterPro

Protein Sequence (294 amino acids)

>Ga0059261_1123 flagellar motor stator protein MotA (Sphingomonas koreensis DSMZ 15582)
MLNAIGLVIILLCVFGSFLLSGGNLGVILHALPHEMLAIAGAAVGAFILGNSLATVKKAW
KGTVRVFKGVRWTEADFRDLLALLYTLLSTFRKDGANAIEKHLDQPEESSIFNRYPKLLK
DQGLIEFICDYLRMMTVNFEDPHQMAEAMEGDIERHHAEELQPQHAIQIMADGLPALGIV
AAVLGVIKTMSSIDQPTEVLGAMIGGALVGTFLGVLLAYCLVGPIASKLQQIIDADFKPY
LIVKTAIVGHAQGQPTQVAIELARRMTPSAYAPSFAQLEAALDDVKDQLNAKPA