Protein Info for Ga0059261_1092 in Sphingomonas koreensis DSMZ 15582

Annotation: flagellar motor switch protein FliN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 TIGR02480: flagellar motor switch protein FliN" amino acids 44 to 118 (75 residues), 96.3 bits, see alignment E=4e-32 PF01052: FliMN_C" amino acids 47 to 116 (70 residues), 83.6 bits, see alignment E=3.8e-28

Best Hits

KEGG orthology group: K02417, flagellar motor switch protein FliN/FliY (inferred from 57% identity to rpe:RPE_0968)

Predicted SEED Role

"Flagellar motor switch protein FliN" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J9P3 at UniProt or InterPro

Protein Sequence (120 amino acids)

>Ga0059261_1092 flagellar motor switch protein FliN (Sphingomonas koreensis DSMZ 15582)
MSEDTEPRQLTPAHLTDGADGDVEMNADPNWSPRPSAPPVPDDLHAVFDVPVKVQAILGR
ARMDIGELLRLKPGMVVELDRRVGEPVDIFVNNRLIARGEVVLIDSALGITLTEIVRQER