Protein Info for Ga0059261_1060 in Sphingomonas koreensis DSMZ 15582

Annotation: ABC-type Na+ efflux pump, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 20 to 47 (28 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 229 to 256 (28 residues), see Phobius details amino acids 277 to 301 (25 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 339 to 348 (10 residues), see Phobius details amino acids 367 to 389 (23 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 140 to 386 (247 residues), 68.7 bits, see alignment E=2.6e-23

Best Hits

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WA57 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Ga0059261_1060 ABC-type Na+ efflux pump, permease component (Sphingomonas koreensis DSMZ 15582)
MSSLARLIRQTLTIARRDFVATVFTPTFLLFLFAPLMMVGFGAIGGVGAASISKSGDDKA
RIVLLAGGDQARSAIAADRQLRAMFRSLEQPPRLIVETPGPNPEAQGRAMFERKESDTYA
VMYGPLDKPQILHSVNGGRSAAYLAALADQVLRAQRAGTAAPLSEATKIIVTRPGASAGG
QGQAAFFATTALFMISLLLAGQVVGTMAEERSNKVIEVLAAAVPLESVFFGKLVGMFGVA
LLFLGFWGTVVVNVGSLLPVKLATAFIDVGPAVGLPMFGLLFFAYFVTSYMLLGAVFLGL
GAQASTQRELQMMSLPITIFQVAMWGLASATALSPDSGLATAAAAFPFSSPFAMVARAAN
APDLWPHALALGWQILWVAITVTIAARLFRRGVLQSGSPGLRLRKKTAS