Protein Info for Ga0059261_1043 in Sphingomonas koreensis DSMZ 15582

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF04386: SspB" amino acids 43 to 168 (126 residues), 158.8 bits, see alignment E=5.6e-51

Best Hits

KEGG orthology group: K09985, hypothetical protein (inferred from 68% identity to sal:Sala_3150)

Predicted SEED Role

"FIG00636645: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WA46 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Ga0059261_1043 Uncharacterized protein conserved in bacteria (Sphingomonas koreensis DSMZ 15582)
MPPIDLRLTVLGQQAILTGAARPVGNGPMTGNVPDSLIPYDEIVQEALRAVVGRVLDQVA
ATGALPGTHHFYITFKTRAPGVDIPDRLLERFPDEMTIVLQHRFWDLKVDDERFSVGLSF
NQIPSMLVIPFAAITGFHDPAVNFELRFQAAEDPDGPEPHDEAENDGPPLATPVEDGSNV
VAVDFKRKK