Protein Info for Ga0059261_1026 in Sphingomonas koreensis DSMZ 15582

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 TIGR00634: DNA repair protein RecN" amino acids 1 to 551 (551 residues), 449.5 bits, see alignment E=1.2e-138 PF02463: SMC_N" amino acids 14 to 510 (497 residues), 58.3 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 72% identity to swi:Swit_4729)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WA27 at UniProt or InterPro

Protein Sequence (553 amino acids)

>Ga0059261_1026 DNA repair protein RecN (Sphingomonas koreensis DSMZ 15582)
MLTGLNIRDVVLIEALDLDFRAGLGVLTGETGAGKSILLDSLGLALGMRADSGLVRQGAA
QAVVTASFELADPAPVATLLAENGIDFDPSEPLLIRRIVKADGGSRAFVNDSPASAALLR
ELGAFLVEIHGQHDDRGLLNPRGHRVLLDIFGKLDTGAVADAHRAFRAAEEELAAAREEQ
ENAARDREWLEHAVAELTALAPEPGEEEQLAERRASMQRGEKIAGELQAIADLLDGSDGA
LTRLRQAARILERIADDHPALAESLAALDRALIEGGTTHEKVDEAAEALAFDPQALEADE
ARLFELRGLARKHRVQPDDLAELTETLSARLARIEGGEDTIHRLEAALAKAEAAYTQAAE
TLSAARTAAAARLDSAVATELAPLKLDAARFRTVVDPLPRDQWAASGRDRVEFEVSTNPG
APFAPLIKIASGGELSRFILALKVALAEEGGARTLIFDEIDRGVGGAVASAIGERLARLA
ADAQLLVVTHSPQVAARGRHHLLIAKSHDGLVTRTGVRALDNDARREEIARMLSGAQITD
EARAQADRLLETA