Protein Info for Ga0059261_0946 in Sphingomonas koreensis DSMZ 15582

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 58 to 78 (21 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details PF06170: DUF983" amino acids 31 to 115 (85 residues), 105.4 bits, see alignment E=8.2e-35

Best Hits

KEGG orthology group: None (inferred from 65% identity to npp:PP1Y_Mpl6250)

Predicted SEED Role

"conserved hypothetical protein in cyt c oxidase gene clusters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JA06 at UniProt or InterPro

Protein Sequence (144 amino acids)

>Ga0059261_0946 Uncharacterized protein conserved in bacteria (Sphingomonas koreensis DSMZ 15582)
MQAEPKQDKLNWVLRTGWKGLCVRCGEKTMFSGWLKIAKKCPSCGLDYRFASPDDGPAFF
SLCFVAFPLTFFGVWFQVAFDPPFWVHLFTTIPVMVAGCVLALRPLKGWLVASQYLNNAQ
EAGTAKLWAKLHAEAEARDTPPND