Protein Info for Ga0059261_0937 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 PF01022: HTH_5" amino acids 57 to 81 (25 residues), 25 bits, see alignment 7e-10

Best Hits

Swiss-Prot: 42% identical to YBZH_BACSU: Uncharacterized HTH-type transcriptional regulator YbzH (ybzH) from Bacillus subtilis (strain 168)

KEGG orthology group: K03892, ArsR family transcriptional regulator (inferred from 50% identity to pwa:Pecwa_1845)

Predicted SEED Role

"transcriptional regulatory protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W9X9 at UniProt or InterPro

Protein Sequence (109 amino acids)

>Ga0059261_0937 Predicted transcriptional regulators (Sphingomonas koreensis DSMZ 15582)
MYFVNWQTIYMTDAELFRALGNDRRLQILAWLKDPTAHFPPQRDGDLIEDGVCGQLIAEK
LGINASTLSEHMRVLQGCGLVIAKRIKQWTFYRRNGERLQALASIVGGI