Protein Info for Ga0059261_0882 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 209 to 228 (20 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 307 to 330 (24 residues), see Phobius details amino acids 342 to 358 (17 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details PF06772: LtrA" amino acids 21 to 374 (354 residues), 276.4 bits, see alignment E=2e-86

Best Hits

KEGG orthology group: None (inferred from 69% identity to swi:Swit_2961)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W9P6 at UniProt or InterPro

Protein Sequence (389 amino acids)

>Ga0059261_0882 Predicted membrane protein (Sphingomonas koreensis DSMZ 15582)
MGHKAIRPMKPRDPHEQHRAATPLELLFDLVTVIAIAAAAASLHHGIAADHAAEGVVRYL
FTFFAIWWAWMNFTWFASAYDNDDAPTRLLTMVIMGGALLIAAGIERFSAHLDISLVVAG
YAMMRVAMIALWLRAAWHDPARRPCALRYAAGIAIAQIYWIGLYFLGDPHSPVFIALILL
GWLIELAVPAIAERAGMTPWHRHHIVERYGLLTIIVLGEVLLAATLALEKAWDGSFDVRL
VHTAISALVITFAMWWLYFAREEQLSSARLSRALQWGYGHMIVFASGAAVGAGFAVLVEI
LTGHSKIGIRAGDLAVAIPLGIYFLALWLVRDRFELHGAARWVLPVFAAAVIALPFAFPA
LEAIAALAVAAVAIRAALAARSVRAESAA