Protein Info for Ga0059261_0793 in Sphingomonas koreensis DSMZ 15582

Annotation: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF05448: AXE1" amino acids 407 to 552 (146 residues), 24.5 bits, see alignment E=6.7e-09 PF02129: Peptidase_S15" amino acids 414 to 554 (141 residues), 45.3 bits, see alignment E=5.9e-15 PF20434: BD-FAE" amino acids 423 to 614 (192 residues), 52.6 bits, see alignment E=2.9e-17 PF00756: Esterase" amino acids 425 to 647 (223 residues), 29 bits, see alignment E=6e-10 PF12697: Abhydrolase_6" amino acids 435 to 568 (134 residues), 31.4 bits, see alignment E=2.1e-10 PF01738: DLH" amino acids 449 to 639 (191 residues), 46.2 bits, see alignment E=2.8e-15 PF00326: Peptidase_S9" amino acids 451 to 653 (203 residues), 155.9 bits, see alignment E=7.2e-49 PF07859: Abhydrolase_3" amino acids 492 to 633 (142 residues), 26.3 bits, see alignment E=3.9e-09

Best Hits

Predicted SEED Role

"Prolyl oligopeptidase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W9I8 at UniProt or InterPro

Protein Sequence (656 amino acids)

>Ga0059261_0793 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases (Sphingomonas koreensis DSMZ 15582)
MSRIVRAGASVFALIGAAGSNAAAQTAAPVASTSSAAPAPAARAPLPVEAFAELPDIEGP
DLSPDGTQVAGRVAIKGKQYFAVAKLGGEGPPKLLNPGEADLNWWRWVNDEWLIVGIGRE
VPVEGDSWYVKRAIGFHAPSAKTIQLAPRSVAQNGDDVIWVSRDGAPRVLLSYQTSIYTN
DAGFWPQVDEVDLTTGKRRMIVPSKAGVFNWYADGAGLVRMGIGMSEDGRSRRLLYRDRP
NALFRTIDRAKTREDRLTVPALFLEDKTRALVIDDDEKGYSALYELDLTTLERGKQLFAS
KGYDIGGIVPDSAGSGYLGISVEEDRPLIRWTDADMMAMQSAVSALVKGAQARIVSLNRD
RSRALIAVGGADAPGGYFVYSRSENTMDPLGYNNRTIKMRRMHPVRTIRYKARDGLEIAA
VLTVPASRKGKLPLIVMPHGGPFARDSETWDWWTQFLADRGYVVIQPNYRGSSGYGTEFE
KKGRGQWGLAMQDDLDDAVKAIADLGIADPSRVCMVGASYGGYAAMRAAQRDGNRYRCAV
SYAGVSDLNRMLKHTSSFLGGGARGDWLRDQAPDLKNVSPLNFPQQFSIPVLLVHGEKDR
VVPLVQSKVMAQKLKSAGKDVTYIVQPEADHHFSRTEDRLEFLKALEAFLAKHNPA