Protein Info for Ga0059261_0658 in Sphingomonas koreensis DSMZ 15582

Annotation: Beta-lactamase class C and other penicillin binding proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00144: Beta-lactamase" amino acids 41 to 402 (362 residues), 238.4 bits, see alignment E=6.2e-75

Best Hits

KEGG orthology group: None (inferred from 49% identity to rbi:RB2501_00471)

Predicted SEED Role

"Beta-lactamase class C and other penicillin binding proteins" in subsystem Beta-lactamase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W959 at UniProt or InterPro

Protein Sequence (426 amino acids)

>Ga0059261_0658 Beta-lactamase class C and other penicillin binding proteins (Sphingomonas koreensis DSMZ 15582)
MRRPRMTALTGLMLVMAAPLPAMAQERPAPVETLRIDKARIDKMLATMVADGRAAGVSAL
VWKDGREVYYGERGMADREGNRPFRRDTLVQIWSMTKPVTGVALMQLWEQGKFRLDDPLA
RYLPEFSNPLVQDGTDREGKPLWRAASRPITIRDVLRHTAGFAYGNGPTAAHKAFAAADP
LNFDNDLAEFGRRLAKVPLLSEPGTEWHYSAAVDVQALLVERLSGMKFADYVRARIFEPL
RMREAAWHQPMDRLPRLAATYVKQDGKLARQADEMTRRPNFPGAKLTMGGAGIVAPIDDY
MRFARMLLNGGELDGAHILNPATIRLMATDQLDPAIKEREWLMGKIDGGFGFDFAVRTAR
PDKPERNRGAVGEFFWDGMASTLFWVDPANRMTVVFFTQTIPFDGTLHTDIRKAVYGADY
LGPPGN