Protein Info for Ga0059261_0591 in Sphingomonas koreensis DSMZ 15582

Annotation: Outer membrane receptor for ferrienterochelin and colicins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 794 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07715: Plug" amino acids 53 to 169 (117 residues), 67.2 bits, see alignment E=1.8e-22 PF00593: TonB_dep_Rec" amino acids 294 to 755 (462 residues), 138.3 bits, see alignment E=7.2e-44

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 73% identity to npp:PP1Y_Mpl1312)

Predicted SEED Role

"TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8W0 at UniProt or InterPro

Protein Sequence (794 amino acids)

>Ga0059261_0591 Outer membrane receptor for ferrienterochelin and colicins (Sphingomonas koreensis DSMZ 15582)
MKHTATSALAALAFACAPATAQTLSTTSDAGTEAGADDSIVVVTGTRERSRTQFDTLAPV
DVLSADAVRSSVSGDLSDTIAQLLPSFNVQRLPAADGLAFVRPATLRGLSPDQTLVLLNG
KRYHRSALLGTRGAQAPDLASIPSLAIKRIEVLRDGASAQYGSDAIAGVINIILEDKPGM
EVFGQFSQYFEGDGNEYQSGVRGGAALGDRGSIVFTGQYGKAEATSRTRQRPDAIAFQNA
NPTIKVPNPVQRWGQPDEERIRGSVDARYEIADNVTVYTFLTAQSGEGVTDFNWRNPAGT
ANVYNPSSAFPGFSFRTLYPAGFTPRFGTKYSDFQANSGVRGDLSEAFSYDLSVGFGRSR
IDYNMRESLNASMGPLSPTSFYIGRLEQREFNINADFVYRLPVGGAEPLNIAFGAERRRE
TYKVGAGDPASYAIGPGAATGLAPSSNGFPGFSPMAAGSWDQTSYAGYVDLEWRPVEMLT
LGAAGRYEDFSAFGDTFNYKLAARFEPIDGIAARATWSTGFRAPTPGQLNSIQTTQGLDT
VTLQIFNQGRLSPSDPLAIALGAKPLTPETSKTLTAGLTFQTDIGFSGSIDLYQIDVDDR
FSQSRTFAVPASFPNPQRFTSVSYFTNDFDTRTRGVDVVLNYARKLGPGRATATLAYNYN
DTKVRSGTSAAIPNETQRRVFEERLPQNNGTASLGYEIGGFSLLMRGRYYGAWTDVSGNA
TGELFQRFGGIALFDVAVAYRFDEHFTLRAGAENVFDTYPDEATNQAVRGLIYSRNAPYD
TDGGQYYVRLGVTF